pycaravel: This module is designed to simplify continuous integration (CI) of data from multiple projects.
Source code for caravel.loaders._vcf
##########################################################################
# NSAp - Copyright (C) CEA, 2019
# Distributed under the terms of the CeCILL-B license, as published by
# the CEA-CNRS-INRIA. Refer to the LICENSE file or to
# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
# for details.
##########################################################################
"""
This module defines the CSV dataset loader.
"""
# Third party import
import vcfpy
# Package import
from .loader_base import LoaderBase
[docs]
class VCF(LoaderBase):
""" Define the TSV loader.
"""
allowed_extensions = [".vcf"]
[docs]
def load(self, path):
""" A method that load the table data.
Parameters
----------
path: str
the path to the table to be loaded.
Returns
-------
data: Ordered dict
the loaded table.
"""
return vcfpy.Reader.from_path(path)
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