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pycaravel: This module is designed to simplify continuous integration (CI) of data from multiple projects.

Source code for caravel.loaders._vcf

##########################################################################
# NSAp - Copyright (C) CEA, 2019
# Distributed under the terms of the CeCILL-B license, as published by
# the CEA-CNRS-INRIA. Refer to the LICENSE file or to
# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
# for details.
##########################################################################

"""
This module defines the CSV dataset loader.
"""

# Third party import
import vcfpy

# Package import
from .loader_base import LoaderBase


[docs] class VCF(LoaderBase): """ Define the TSV loader. """ allowed_extensions = [".vcf"]
[docs] def load(self, path): """ A method that load the table data. Parameters ---------- path: str the path to the table to be loaded. Returns ------- data: Ordered dict the loaded table. """ return vcfpy.Reader.from_path(path)

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